PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016503427.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 342aa    MW: 36582.5 Da    PI: 11.2595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016503427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000131941123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C +C k Fs++  L  H+ +H
  XP_016503427.1 19 YRCDNCRKLFSSSQALAGHQHLH 41
                    9*******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.91E-51844No hitNo description
PROSITE profilePS5015710.7831946IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-41941IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MADETNNYNT TSQGPIVVYR CDNCRKLFSS SQALAGHQHL HKVQGTWVKS HHHKFLLPPH  60
YLPDLNRFIA RNNKSITVRN RGRGKPRTFF EPQPMVQEPL AVAPAPAVAT PLLAQALVPA  120
PTPVVPHRGR PVIQPQPTVQ VPLAAPVPAP ATSLLDQAPA LPLAAAPAPA TPLLAQVPAP  180
ALQLAVAPAP ATPLLAQAPV ARCRGRPRSI IRPQPMAEAP LAAAPTPATP LLVQAPAPAP  240
VARPRGRPRS IIRSQPMVQV PLAAAPAPAT PLLVQGPDPI ARLENQLALF QNRLNYFKGV  300
AARREESTHS STGSTNTITV DKTNGKKKVE EKVEELDLEL RL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016503427.10.0PREDICTED: predicted GPI-anchored protein 58
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6643821